Domain List - domains found in (+)ssRNA viruses

 

Domain# of viruses# of mammal proteins# of plant proteins# of DDI GO
pfam02226/Pico_P1A24  1
pfam08242/Methyltransf_12134276203 
pfam08241/Methyltransf_11174959242
pfam02832/Flavi_glycop_C32  3
pfam08462/Carmo_coat_C2  1 
pfam01003/Flavi_capsid28  1
pfam00721/TMV_coat43  1
pfam03688/Nepo_coat_C10  2
pfam03689/Nepo_coat_N11  2
pfam01829/Peptidase_A65  1
pfam01707/Peptidase_C916   
pfam05579/Peptidase_S324  1
pfam00729/Viral_coat55  2
pfam00680/RdRP_1275  1
pfam05304/DUF7283    
pfam06358/DUF10652    
pfam11289/DUF30922    
pfam12526/DUF37292    
pfam12521/DUF37241    
pfam12523/DUF37252    
pfam06692/MNSV_P7B2    
pfam12379/DUF36552    
pfam07184/CTV_P331    
pfam01538/HCV_NS28  1 
pfam04851/ResIII13738262
pfam06593/RBDV_coat1    
pfam00012/HSP70212492234 
pfam02907/Peptidase_S2911  3
pfam03617/IBV_3A2    
pfam01309/EAV_GS1    
pfam01787/Ilar_coat17    
pfam00851/Peptidase_C668   
pfam08300/HCV_NS5a_1a9  2
pfam08301/HCV_NS5a_1b9  2
pfam03053/Corona_NS3b8    
pfam06922/CTV_P131    
pfam05415/Peptidase_C362    
pfam05414/DUF17172    
pfam05549/Allexi_40kDa6    
pfam05416/Peptidase_C372  1
pfam05411/Peptidase_C323   
pfam05410/Peptidase_C312   
pfam05413/Peptidase_C344   
pfam05412/Peptidase_C334   
pfam03431/RNA_replicase_B7  5
pfam05707/Zot25  1 
pfam00910/RNA_helicase210   
pfam00548/Peptidase_C379  1
pfam00915/Calici_coat29  2 
pfam02248/Como_SCP9  1
pfam08710/nsp930  2
pfam01659/Luteo_Vpg20    
pfam08715/Viral_protease29  1 
pfam01506/HCV_NS5a8   
pfam08717/nsp830  3 
pfam08716/nsp729  2 
pfam08719/DUF176818 6  
pfam12387/Peptidase_C746    
pfam00998/RdRP_372  1
pfam12381/Peptidase_C3G9    
pfam12380/Peptidase_C621    
pfam12383/SARS_3b1    
pfam05381/Peptidase_C2122   
pfam09063/Phage_coat1  1 
pfam11473/B23  1 
pfam02444/HEV_ORF11    
pfam11729/Capsid-VNN7    
pfam12267/DUF36143    
pfam12264/Peptidase_C033    
pfam11479/Suppressor_P212  1 
pfam04548/AIG12127891
pfam05892/Tricho_coat11   
pfam05550/Peptidase_C536   
pfam05578/Peptidase_S316   
pfam00869/Flavi_glycoprot35  4
pfam06723/MreB_Mbl119593 
pfam04521/Viral_P188    
pfam00863/Peptidase_C489  1
pfam05407/Peptidase_C271   
pfam02122/Peptidase_S3922    
pfam02123/RdRP_485  1
pfam01728/FtsJ8479493
pfam03035/RNA_capsid1    
pfam03225/Viral_Hsp9024    
pfam12581/DUF37562    
pfam03220/Tombus_P1911  1
pfam00435/Spectrin1185 5 
pfam05408/Peptidase_C2811  1
pfam05409/Peptidase_C3030  1
pfam12503/CMV_1a_C11    
pfam07728/AAA_528671601 
pfam06336/Corona_5a2    
pfam11030/Nucleocapsid-N1    
pfam01006/HCV_NS4a6  2
pfam01004/Flavi_M29   
pfam01005/Flavi_NS2A32   
pfam01002/Flavi_NS2B32  1
pfam04970/NC113242  
pfam00983/Tymo_coat22  1
pfam03905/Corona_NS46    
pfam11475/VP_N-CPKC1    
pfam12312/NeA_P22    
pfam12093/Corona_NS81    
pfam05528/Coronavirus_52    
pfam00035/dsrm393911103
pfam01660/Vmethyltransf210   
pfam01107/MP58   
pfam05520/Citrus_P181    
pfam05332/DUF7439    
pfam00972/Flavi_NS538  2
pfam12591/DUF37621    
pfam01661/Macro73158441 
pfam00978/RdRP_2192   
pfam08440/Poty_PP83   
pfam01635/Corona_M30   
pfam11125/DUF28302    
pfam03251/Tymo_45kd_70kd15    
pfam04808/CTV_P231    
pfam03566/Peptidase_A215  1 
pfam04530/Viral_Beta_CD7    
pfam03558/TBSV_P2215   
pfam11757/RSS_P206    
pfam09401/NSP1030  1
pfam08762/CRPV_capsid21  1 
pfam03996/Hema_esterase13  3
pfam01560/HCV_NS16    
pfam09408/Spike_rec_bind17  3 
pfam05801/DUF8403    
pfam01831/Peptidase_C1612   
pfam01757/Acyl_transf_389  
pfam03863/Phage_mat-A7    
pfam04888/SseC2   
pfam05318/Tombus_movement13   
pfam01318/Bromo_coat6  1
pfam03620/IBV_3C3    
pfam02340/PRRSV_Env2    
pfam03622/IBV_3B2    
pfam12124/Nsp3_PL2pro2    
pfam08456/Vmethyltransf_C11    
pfam08358/Flexi_CP_N27    
pfam01307/Plant_vir_prot82    
pfam01725/Ham1p_like119221
pfam06716/DUF12011    
pfam07255/Benyvirus_14KDa2    
pfam03391/Nepo_coat10  2
pfam04817/Umbravirus_LDM4    
pfam00286/Flexi_CP76   
pfam02338/OTU422081502 
pfam04753/Corona_NS210    
pfam01539/HCV_env7   
pfam04522/DUF5856   
pfam03510/Peptidase_C2419   
pfam00803/3A36    
pfam03014/SP21  1
pfam08935/DUF186515  1
pfam08467/Luteo_P1-P27   
pfam01573/Bromo_MP17    
pfam01570/Flavi_propep32  2 
pfam00767/Poty_coat83   
pfam00760/Cucumo_coat4  1
pfam01577/Peptidase_S3076   
pfam08727/P3A21  1 
pfam01349/Flavi_NS4B32    
pfam12133/Sars62    
pfam12337/DUF36371    
pfam11501/Nsp12    
pfam07652/Flavi_DEAD74  4
pfam06380/DUF10723    
pfam05744/Benyvirus_P252    
pfam06145/Corona_NS14    
pfam05749/Rubella_E21   
pfam05748/Rubella_E11   
pfam03187/Corona_I11    
pfam06706/CTV_P61    
pfam06478/Corona_RPol_N30   
pfam00653/BIR61116 4
pfam01543/HCV_capsid6  1
pfam01542/HCV_core7   
pfam04513/Baculo_PEP_C52   
pfam06471/NSP1130  1
pfam01819/Levi_coat5  1
pfam01443/Viral_helicase1264  2
pfam00894/Luteo_coat21   
pfam07416/Crinivirus_P261    
pfam01001/HCV_NS4b9   
pfam01690/PLRV_ORF521    
pfam01785/Closter_coat25    
pfam02247/Como_LCP11  1
pfam12226/Astro_capsid_p2    
pfam06309/Torsin172  
pfam02723/NS3_envE21   
pfam01350/Flavi_NS4A32   
pfam09399/SARS_lipid_bind1  1 
pfam01563/Alpha_E3_glycop16   
pfam11633/Nsp36    
pfam05752/Calici_MSP4    
pfam00949/Peptidase_S738  4
pfam05750/Rubella_Capsid1   
pfam03263/Cucumo_2B4  1 
pfam03076/GP31    
pfam03171/2OG-FeII_Oxy4221011012
pfam00943/Alpha_E2_glycop16  2
pfam00944/Peptidase_S316  2
pfam05515/Viral_NABP12    
pfam00947/Pico_P2A21  1
pfam01552/Pico_P2B23   
pfam01601/Corona_S230  2
pfam01600/Corona_S115  1 
pfam05213/Corona_NS2A11    
pfam01623/Carla_C424   
pfam02495/7kD_coat58    
pfam01606/Arteri_env2    
pfam02497/Arteri_GP42    
pfam06414/Zeta_toxin8  2
pfam00073/Rhv86  8
pfam05919/Mitovir_RNA_pol8    
pfam00078/RVT_1102 978
pfam12467/CMV_1a11    
pfam06460/NSP1332    
pfam08500/Tombus_P3320   
pfam02710/Hema_HEFG13  2
pfam00270/DEAD25615089879
pfam00271/Helicase_C2831885129615
pfam04662/Luteo_PO10    
pfam05533/Peptidase_C427    
pfam08435/Calici_coat_C3  2 
pfam01481/Arteri_nucleo3  1
pfam08405/Calici_PP_N3   
pfam07349/DUF14781    
pfam03115/Astro_capsid6    
pfam12285/DUF36211    
pfam04920/DUF6562    
pfam05271/Tobravirus_2B1   
pfam05379/Peptidase_C2336    
pfam05417/Peptidase_C411   
pfam12601/Rubi_NSP_C1    
pfam11492/Dicistro_VP411    
pfam05279/Asp-B-Hydro_N112  
pfam12115/Salp151    
pfam00636/Ribonuclease_32047492
pfam00948/Flavi_NS137    
pfam12364/DUF36481    
pfam00089/Trypsin12165710530
pfam11889/DUF34096    
pfam03010/GP41    
pfam06363/Picorna_P3A2   
pfam11252/DUF30511    
pfam01589/Alpha_E1_glycop16  2
pfam00937/Corona_nucleoca28  2
pfam00004/AAA69700100220
pfam08779/SARS_X42    
pfam00951/Arteri_Gl4   
pfam11963/DUF347711    
pfam06344/Parecho_VpG1   
pfam10943/DUF26321    
pfam00485/PRK1481151
pfam03368/dsRNA_bind1    


 
abbr.
* DDI: Domain-Domain Interaction
* GO: Gene Ontology