Domain List - domains found in (-)ssRNA viruses

 

Domain# of viruses# of mammal proteins# of plant proteins# of DDI GO
pfam00843/Arena_nucleocap26   
pfam00846/Hanta_nucleocap9  1
pfam04159/NB1   
pfam11986/PB1-F25    
pfam03113/RSV_NS23    
pfam00603/Flu_PA8  2
pfam00602/Flu_PB111  2
pfam00601/Flu_NS26  1 
pfam00600/Flu_NS15  2
pfam01533/Tospo_nucleocap7   
pfam00604/Flu_PB27  3
pfam02477/Nairo_nucleo2   
pfam06595/BDV_P241    
pfam01611/Filo_glycop6  1 
pfam02478/Pneumo_phosprot6   
pfam04785/Rhabdo_M25   
pfam06436/Pneumovirus_M26   
pfam03438/Pneumo_NS13    
pfam03231/Bunya_NS-S_27    
pfam05310/Tenui_NS32    
pfam00423/HN27  3
pfam05554/Novirhabdo_Nv1    
pfam10538/ITAM_Cys-rich9   
pfam07948/Nairovirus_M2    
pfam04876/Tenui_NCP2    
pfam06407/BDV_P401    
pfam12426/DUF36748    
pfam01728/FtsJ8479493
pfam00661/Matrix27   
pfam00922/Phosphoprotein1  2
pfam00973/Paramyxo_ncap24  1
pfam02097/Filo_VP356  1 
pfam00974/Rhabdo_glycop17  1
pfam07380/Pneumo_M22    
pfam02942/Flu_B_NS11  1 
pfam03300/Tenui_NS42    
pfam03557/Bunya_G14   
pfam06215/ISAV_HA2    
pfam11128/Nucleocap_ssRNA3    
pfam03021/CM21    
pfam06326/Vesiculo_matrix7   
pfam01445/SH1   
pfam00523/Fusion_gly33  2
pfam03996/Hema_esterase13  3
pfam01567/Hanta_G19    
pfam03854/zf-P1125   
pfam03555/Flu_C_NS21    
pfam05733/Tenui_N5  1
pfam08289/Flu_M1_C6  1
pfam03563/Bunya_G24    
pfam03026/CM11   
pfam03393/Pneumo_matrix6   
pfam00642/zf-CCCH14092722
pfam03397/Rhabdo_matrix4    
pfam06656/Tenui_PVC22    
pfam03012/PP_M15  1
pfam03246/Pneumo_ncap6  1
pfam00803/3A36    
pfam00802/Glycoprotein_G3   
pfam01107/MP58   
pfam01104/Bunya_NS-S4   
pfam06317/Arena_RNA_pol26   
pfam08720/Hema_stalk1  2
pfam11507/Transcript_VP306  1 
pfam00599/Flu_M25  1
pfam00598/Flu_M16  3
pfam03273/Baculo_gp6414   
pfam00798/Arena_glycoprot26  3
pfam05505/Ebola_NP6   
pfam06389/Filo_VP246   
pfam07246/Phlebovirus_NSM1    
pfam11330/DUF31321    
pfam07245/Phlebovirus_G23    
pfam07243/Phlebovirus_G13   
pfam02484/Rhabdo_NV2    
pfam00506/Flu_NP7  2
pfam00064/Neur6  2
pfam01692/Paramyxo_C3    
pfam01561/Hanta_G29    
pfam02725/Paramyxo_NS_C5    
pfam02338/OTU422081502 
pfam04196/Bunya_RdRp27   
pfam04772/Flu_B_M21  1 
pfam07447/VP406  1 
pfam00945/Rhabdo_ncap13  3
pfam00946/Paramyx_RNA_pol71   
pfam01806/Paramyxo_P4   
pfam03506/Flu_C_NS11    
pfam11073/NSs2    
pfam02710/Hema_HEFG13  2
pfam09595/Metaviral_G2    
pfam07375/Tenui_PV22    
pfam00952/Bunya_nucleocap4   
pfam03216/Rhabdo_ncap_24   
pfam03210/Paramyx_P_V22  2
pfam03342/Rhabdo_M14    
pfam12603/DUF37705    
pfam06515/BDV_P101    
pfam00509/Hemagglutinin6  5
pfam06208/BDV_G1    
pfam03579/SHP3   


 
abbr.
* DDI: Domain-Domain Interaction
* GO: Gene Ontology